Contichrom® PILOT

The Contichrom® PILOT 300X is a preparative HPLC system engineered for pilot-scale manufacturing of pharmaceuticals in a GMP environment. It combines twin-column continuous chromatography (MCSGP with AutoPeak®) with the robustness required for pilot-scale production. Designed to handle both aqueous and organic solvents, the system is fully compliant with hazardous location requirements (ATEX Zone 2, Class I Div 2), making it ideal for the purification of peptides, oligonucleotides, and other synthetic molecules. With a maximum operating pressure of 100 bar, a flow rate of up to 300 mL/min, and columns up to 10 cm ID, methods developed on the Contichrom CUBE transfer directly to the PILOT 300X using established scale-up protocols.

Overview

GMP-Ready Preparative HPLC for Pilot-Scale Manufacturing

The Contichrom® PILOT 300X is a preparative HPLC system engineered for pilot-scale pharmaceutical manufacturing in GMP environments.

  • Twin-column continuous chromatography (MCSGP with AutoPeak®)
  • ATEX Zone 2 / Class I, Div 2 certified for organic solvents
  • 100-bar pressure, up to 300 mL/min flow rate
  • Purpose-built for peptides, oligonucleotides, and synthetic molecules
  • ChromIQ® X software with 21 CFR Part 11 compliance

One System, Multiple Processes

A single GMP-ready platform — no hardware changes between modes:

Mode Technology
Batch Single-column batch purification
2D Integrated Batch Two orthogonal steps, one automated process
Continuous polishing MCSGP with AutoPeak®
Impurity enrichment N-Rich® with AutoPeak®
  • Every process benefits from AutoPeak® dynamic control
  • Enables unattended 24/7 operation

ATEX-Compliant for Organic Solvents

Fully certified for hazardous location operation:

Specification Value
European ATEX Zone 2
North American Class I, Division 2
Enclosure IP23
  • Intrinsically safe components throughout the fluid path
  • Electrical cabinet with nitrogen air purge
  • ATEX-compliant keyboard via electronic safety barrier
  • ESD-protected low-pressure tubing
  • Ideal for reversed-phase purification with flammable organic solvents

High-Pressure, High-Performance Design

Built for demanding pilot-scale applications:

Specification Value
Maximum Operating Pressure 100 bar (10 MPa / 1450 psi)
Flow Rate Up to 300 mL/min per pump
Column ID Range 2.7–10 cm
Flow Path Materials SS 316L or Hastelloy
  • Supports modern high-performance resins for RP and IEX chromatography
  • 20 automated buffer/sample inlets eliminate manual switching
  • Choose between SS 316L or Hastelloy flow paths

ChromIQ® X Software Suite

GMP-ready control software with 21 CFR Part 11 compliance:

  • Method Editor — Batch, integrated, and continuous process design
  • AutoPeak® — Dynamic process control for MCSGP and N-Rich®
  • Data Integrity — Secure PostgreSQL database with full audit trail
  • User Management — Multi-level access with Active Directory support
  • Connectivity — OPC UA client/server for plant integration
  • Workflow — Methods transfer from CUBE’s ChromIQ® 9 wizards to ChromIQ® X for pilot-scale execution

Comprehensive Application Range

Application MCSGP Integrated Batch N-Rich
Peptides
Oligonucleotides
Nutraceuticals
Impurity Isolation
  • All processes run on the same hardware
  • AutoPeak® dynamic control across every mode

MCSGP: Continuous Polishing at Pilot Scale

MCSGP with AutoPeak® resolves the purity-yield trade-off that limits batch chromatography:

  • Impure side-fractions automatically recycled to the second column with in-line dilution
  • Near-complete recovery of target molecule at target purity
  • Eliminates re-chromatography and reduces QC burden
  • Significantly lower eluent consumption and improved Process Mass Intensity (PMI)
  • Enables downscaling of upstream synthesis batches through higher yields
  • AutoPeak® ensures consistent quality via unattended 24/7 operation

Dynamic Process Control

AutoPeak® adjusts collection windows in MCSGP and N-Rich® using real-time UV triggers:

  • Compensates for feed variability, column aging, and retention shifts
  • Delivers consistent purity and yield without operator intervention
  • Minimizes scope for user error
  • Enables robust, unattended 24/7 operation
  • Makes the process more economical and reliable at pilot scale

Scalable from Lab to Production

Part of the Contichrom® platform with established transfer protocols:

System Flow Rate Application
Contichrom® CUBE 0.1–100 mL/min Method development
Contichrom® PILOT 300X Up to 300 mL/min Pilot / clinical manufacturing
Contichrom® TWIN HPLC 0.5–36 L/min Commercial GMP production
  • Develop on the CUBE, scale on the PILOT 300X, produce on the TWIN
  • Consistent AutoPeak® control principles across all systems
  • YMC ChromaCon provides expert assistance for every scale-up step

Designed for GMP Compliance

Built to meet stringent pharmaceutical manufacturing requirements:

  • Developed under the GAMP 5 framework
  • 21 CFR Part 11 compliant software (ChromIQ® X)
  • Comprehensive Turnover Package (TOP) conforming to ASME BPE standards
  • Full material traceability with certificates (FDA 21 CFR 177, USP ⟨88⟩ Class VI, EMA 410/01)
  • Surface roughness of wetted metallic parts: < 0.8 µm

TOP includes: P&IDs, material certificates, calibration certificates, component lists, performance reports.

Precision Hardware You Can Count On

A stand-alone, GMP-ready system on clean-room compliant wheels:

  • 4× Pumps — Binary gradient + 2 isocratic, active seal wash
  • 2× UV Detectors — 4-channel, multi-wavelength (200–600 nm)
  • 2× Conductivity sensors — 0–250 mS/cm
  • 8× Pressure sensors — Post-pump, pre-column, post-column
  • 2× Temperature sensors — On column outlets
  • 1× Air sensor — Ultrasonic on feed line
  • Pneumatic valve network — 20 inlets, HP switching, 4+4 fractionation outlets
  • 24″ HMI — ATEX-compliant touchscreen on rotatable arm
  • Optional: pH sensors, eluent heat exchangers, fraction collector interface

How it works

Robust Hardware Engineered for GMP Pilot-Scale Chromatography

The PILOT 300X is designed as a stand-alone unit for GMP environments:

  • Clean-room compliant wheels with IP23-rated enclosure
  • Entire fluid path outside the main chassis for accessibility and serviceability
  • Two column positions for independent and interconnected operation
  • Cold room compatible (4–30 °C)
  • Every component engineered for automated high-pressure switching (MCSGP, N-Rich®)

Four High-Precision Piston Pumps

Four dual-head piston pumps deliver up to 300 mL/min each at 100 bar:

Pump Role
P1A + P1B Binary gradient — polishing
P2 Isocratic — dilution, regeneration
P3 Feed — sample loading with air sensor
  • Flow Rate Accuracy: ±2% (above 2.0 mL/min)
  • Precision: ±0.5% RSD
  • Gradient Accuracy: ±2% (above 10 mL/min for 10–90 %B)
  • Active seal wash — 2 loops: 1 for feed pump, 1 shared
  • Low pulsation for stable baselines

20-Inlet Buffer & Sample Selection

Four dedicated valve assemblies provide 20 addressable inlets:

Pump Group Inlets Function
Gradient (P1A/P1B) 8 (2× 4-port valves) Elution solvents
Isocratic (P2 + P3) 12 (2× 6-port valves) Feed, buffers, wash
  • Fully automated buffer and sample selection
  • Supports complex multi-step methods without manual intervention

Pneumatic Valve Network

Fast-acting, pneumatically actuated on/off valves form the fluidic control core:

  • LP Inlet Valves (×4) — 20 total inlets for automated buffer/sample selection
  • YMC Fast-Switching HP Valves (×7+) — Flow direction control (forward, reverse), column bypass, and inter-column connections for continuous processes
  • Fractionation Valves (×2) — 4 product outlets + 4 waste outlets
  • Optional: Interface for external fraction collector (ATEX compliance: user responsibility)

Dual UV Detectors

Parameter Specification
Type Multi-wavelength, 4-channel Diode Array (DAD)
Range 200–600 nm
Path length 0.5 mm (exchangable for 0.1, 0.3, & 1 mm options)
Light source Long-life deuterium lamps via fiber-optic guides
  • Unique post-column placement essential for monitoring between interconnected columns
  • Provides the real-time UV signals that enable AutoPeak® dynamic process control

In-Line Process Sensors

Comprehensive real-time monitoring across the entire system:

Sensor Quantity Placement
Conductivity 2 Column outlets
Pressure 8 Post-pump, pre/post-column
Temperature 2 Column outlets
Air (ultrasonic) 1+ Feed line (+ optional)
  • Conductivity sensors (0–250 mS/cm) track gradients and buffer transitions
  • Pressure sensors enable precise system and differential pressure monitoring
  • Air sensor protects columns from dry running and allows complete feed consumption

Static Mixers

Three high-pressure static mixers ensure homogeneous fluid composition:

  • Gradient mixer — After P1A/P1B for reproducible mobile phase composition in RP and mixed-mode applications
  • Recycle line mixers (×2) — In-line dilution during MCSGP side-fraction recycling, ensuring optimal binding conditions at the second column
  • Material: All SS 316L

Column Management

Flexible column configurations for varied applications:

  • 2 column positions with dedicated inlet, outlet, and bypass valves
  • 100 bar maximum column pressure
  • Column ID range: 2.7–10 cm (depending on linear flow rate)
  • External mounting for easy access and temperature control
  • Bypass valves allow single-column operation while the second position is serviced

ATEX Safety Systems

Multi-layered safety design for organic solvent operation:

  • Intrinsically safe components throughout the fluid path
  • Electrical cabinet protected by continuous nitrogen air purge (requires 8–10 bar N₂)
  • ATEX-compliant keyboard connected via electronic safety barrier
  • ESD-protected low-pressure tubing
  • IP23-rated enclosure
  • Certified: ATEX Zone 2 (Europe) / Class I, Division 2 (North America)

Human-Machine Interface (HMI)

System control via integrated industrial PC running ChromIQ® X:

Component Specification
Touchscreen 24″ Siemens, Full HD, ATEX-compliant
Keyboard ATEX-compliant, integrated touchpad
Mounting Rotatable arm (front or side position)
  • Safe and efficient operation within GMP environments
  • Flexible positioning within your facility

GMP-Grade Flow Path

Every wetted surface selected for chemical resistance and biocompatibility:

Component Materials
Pumps SS 316L/Hastelloy, PEEK, ETFE, ceramic, PTFE
Valves SS 316L/Hastelloy, PCTFE, FFKM, PTFE
HP Tubing SS 316L or Hastelloy — 1/8″ OD, 1.78 mm ID
LP Tubing FEP (ESD-protected) — 1/4″ OD, 4.8 mm ID
UV Detectors PEEK, Quartz, FEP
Conductivity PEEK, Titanium
  • Choose between SS 316L or Hastelloy for the complete flow path
  • Full traceability with certificates (FDA 21 CFR 177, USP ⟨88⟩ Class VI, EMA 410/01)
  • Surface roughness < 0.8 µm on wetted metallic parts

Optional Hardware

Extend system capability with optional modules:

Option Specification
pH Sensors (×2) pH 1–14, glass/PEEK wetted parts, 16 bar max
Eluent Tempering (×3) RT–60 °C eluent pre-heating (pre-column, x2), RT cooling at outlet (x1)
Fraction Collector External interface (ATEX compliance: user responsibility)
Air Sensors Additional ultrasonic sensors for buffer lines
  • pH probes install on product and waste outlet lines
  • Eluent tempering requires external water source for heating/cooling
  • Fraction collector supports large-volume collection

Process Capabilities

Beyond Batch: Continuous Chromatography at Pilot Scale

The PILOT 300X is engineered for twin-column continuous processes that fundamentally improve purification economics:

MCSGP with AutoPeak® — Continuous Polishing

Twin-column continuous polishing that eliminates the purity-yield trade-off:

  • Impure side-fractions automatically identified and recycled to the second column
  • In-line dilution ensures optimal binding conditions
  • Near-complete recovery at target purity — no re-chromatography
  • AutoPeak® dynamically adjusts collection windows via real-time UV
  • Compensates for drift, column aging, and feed variability

Target: Gradient polishing separations Molecules: Peptides, oligonucleotides, small molecules, nutraceuticals

MCSGP — Performance Gains

Metric Result
Yield Near-complete recovery at target purity
Re-chromatography Eliminated
Column size Smaller — parallel processing removes idle time
Eluent consumption Significantly reduced
Synthesis batch size Downscaling possible due to higher yields
PMI Significantly improved
Process control AutoPeak® enables unattended 24/7 operation

One column elutes while the other loads — continuous output, zero downtime, consistent quality.

2D Integrated Batch — Multi-Step Automation

Couple two orthogonal chromatography steps in a single automated process:

  • Product from column 1 transfers directly to column 2 with in-line dilution
  • No intermediate hold tanks or manual handling
  • Example: RP polishing (Dim 1) → AIEX polishing (Dim 2)
  • Reduces process time, QC burden, and facility footprint

Target Molecules: Peptides, oligonucleotides, small molecules, nutraceuticals

N-Rich® with AutoPeak® — Impurity Enrichment

Automated twin-column cyclic process for isolating low-abundance compounds:

  • Fresh feed added each cycle while depleting unwanted products
  • Target compounds continuously recycled and accumulated on-column
  • Up to 80× faster than traditional pooled HPLC approaches
  • AutoPeak® compensates for retention shifts across many cycles
  • Drastically reduces manual handling and project time

Target Molecules: Low-abundance compounds

N-Rich® — Performance Gains

Metric Result
Processing speed Up to 80× faster than pooled HPLC
Manual handling Drastically reduced
Purity Significantly higher than semi-prep batch
Project time Dramatically shortened
Process control AutoPeak® ensures consistency across all cycles

Four stages: Design → Enrichment → Depletion → Elution.

Batch Chromatography

Single-column batch purification with full gradient and isocratic capability:

Mode Applications
Isocratic Affinity capture, SEC, desalting
Gradient IEX, RP, mixed-mode polishing
  • 100-bar design supports modern high-performance resins
  • Full UV/conductivity/pressure/temperature monitoring included
  • Reversed-phase and ion exchange chromatography

Regulatory Compliance & Documentation

Certifications

  • CE and ATEX Zone 2 (Europe)
  • UL and Class I Division 2 (North America)
  • Developed under GAMP 5 framework
  • Complies with FDA 21 CFR Part 11 regulations

Standards & Directives

  • 21 CFR Part 211 (Subparts C & D)
  • EudraLex Vol. 4, Part II, Chapter 5 / ICH Q7
  • EC Machine Directive, Low Voltage Directive, EMC Directive
  • RoHS / REACH
  • NFPA 70/79 (US version)

Materials & Documentation

  • All wetted materials selected for biocompatibility and chemical resistance
  • Full traceability with certificates (FDA 21 CFR 177, USP ⟨88⟩ Class VI, EMA 410/01)
  • Surface roughness of wetted metallic parts: < 0.8 µm
  • Turnover Package (TOP) conforming to ASME BPE standards

TOP includes: P&IDs, material certificates, component lists, calibration certificates, performance reports.

Specifications

General Specifications

Maximum Pressure 100 bar (10 MPa / 1450 psi)
Flow Rate Up to 300 mL/min per pump
Column ID Range 2.7–10 cm
Operating Temperature +4 °C to +30 °C
Hazardous Rating ATEX Zone 2 / Class I, Division 2
Enclosure Rating IP23
Flow Path Materials SS 316L or Hastelloy options
Control System ChromIQ® X on integrated industrial PC
Processes Batch, 2D Integrated Batch, MCSGP, N-Rich®

Physical Specifications



Footprint (W × H × D) 180 × 197 × 85 cm (transport config.)
With HMI Extended Up to 242 cm width or 150 cm depth
Weight 650 kg
Mobility Lockable, clean-room compliant wheels
Power Supply 100–240 VAC, 50–60 Hz, 2000 W
Required Utilities Nitrogen 8–10 bar for ATEX purge

Pumps



Configuration 4× dual-head piston pumps (1× gradient, 2× isocratic)
Flow Rate (Isocratic) 2–300 mL/min per pump
Flow Rate (Gradient) 10–300 mL/min (Sum A+B), 10–90 %B
Flow Rate Accuracy ±2% (above 2.0 mL/min)
Flow Rate Precision ±0.5% RSD
Gradient Accuracy ±2% (above 10 mL/min for 10–90 %B)
Active Seal Wash 2 loops: 1 for feed pump, 1 shared

Detectors & Sensors

UV Detectors (×2) 4-channel, multi-wavelength DAD, 200–600 nm, 0.5 mm path (exchangeable for 0.1, 0.3, or 1 mm)
Conductivity (×2) 0–250 mS/cm, SS 316L/Hastelloy wetted
Pressure (×8) Post-pump, pre-column, post-column
Temperature (×2) 0–80 °C, on column outlets
Air Sensor (×1) Ultrasonic sensor on feed line (additional air sensors optional)
pH (×2, optional) pH 1–14, 16 bar max

Valves & Flow Path



Valve Actuation Pneumatically actuated on/off valves
Buffer/Sample Inlets Gradient: 8 (2× 4-port) · Isocratic: 12 (2× 6-port)
Column Connections 2 positions with inlet, outlet, bypass (100 bar)
Outlets 4 product + 4 waste
HP Tubing SS 316L/Hastelloy, 1/8″ OD, 1.78 mm ID
LP Tubing FEP (ESD-protected), 1/4″ OD, 4.8 mm ID
Mixers Static (1× gradient + 2× recycle line)

Software

Software ChromIQ® X Software Suite
Method Design Editor for batch, integrated, and continuous processes
Dynamic Control AutoPeak® (MCSGP & N-Rich®)
Data Integrity 21 CFR Part 11, full audit trail, secure database
User Management Multi-level, Active Directory support
Connectivity OPC UA client/server

User Interface



HMI ATEX-compliant Siemens, 24″, Full HD
Keyboard ATEX-compliant, integrated touchpad

Optional Modules



Eluent Tempering RT–60 °C pre-heating · RT cooling at outlet · External water required
Fraction Collector Interface for external collector (ATEX: user responsibility)

Technologies

Resources

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Service & Support

FAQ

Why Leading Innovators Choose YMC ChromaCon

With decades of chromatography expertise and proprietary twin-column technologies, YMC ChromaCon helps biopharma teams purify smarter, scale faster, and reduce cost—without compromising quality.

Trusted by Bachem, Novartis, and Leading CDMOs

Proprietary MCSGP, CaptureSMB & AutoPeak® Technology

Expert Process Development, Scale-Up & Training

Success Stories

“The IPC samples are dramatically lower with this technology (MCSGP) and Manufacturing really likes this.”
(Presentation: Development and Manufacture of Oligonucleotides via Enzymatic Ligation
25 Feb 2026, TIDES Asia, Tokyo)

“For oligonucleotides, MCSGP will be a game changer due to Increased sustainability of the purification processes and reduction of cost of goods due to higher yields, automation and lower solvent consumption.“

“Very high recovery was possible using MCSGP, and productivity exceeded the reference process by 3x ”

“MCSGP Performance indicators highlight positive impact for scale-up manufacturing, possibly including a 20-50% reduction in eluent use” (Presentation: TIDES Europe, 13th Nov 2025)

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